Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909492.1_cds_XP_016459678.1_53182
CDS Infomation

[gene=LOC107783222] [db_xref=GeneID:107783222] [protein=rab9 effector protein with kelch motifs-like] [protein_id=XP_016459678.1] [location=join(51891..52031,53402..53929,54054..54119,54310..54476,54564..54711,54799..54886,54982..55355,55467..55571,55663..55971)] [gbkey=CDS]
Sequence

ATGGGATCTTTAGGTGGAGAAGTAGTACAGTTGAAGAATAAGAAGACAATGTGGTTATAT
CCAAAGGTGATGGGTGTTCATCCTTCTGAAAGATGGGGTCATTCTTCTTGTTACTCTAAT
GGCTTTGTTTATGTTTTTGGGGGATGTCGCGGTGGTTTACATTTTAGCGATGTACTTGTA
CTAAATCTCGAGGCAATGGCTTGGAGCATTCTTGTGACTACAGGGCAAGGACCAGGGCCA
AGAGATAGCCACAGTGCTGTTCTTGTTGGCCACAGGATGGTCGTGTTTGGGGGTACAAAT
GGTTCGAGGAAGGTCAATGATCTCCACATATTGGATATCAGGAGCCAAGAATGGACTCAA
CTTGAATGCCAAGGCATTCCGCCTTCACCGCGTGAAAGTCACACGGCTACTCTTGTTGGT
GGTGATAAAATAGTGATTTTTGGTGGTAGCGGTGAAGGCGAGGGGAACTATTTGAATGAT
TTACATGTTTTGGACCTAAAAAGTATGAAGTGGACGTCTCCCGAAGTGAGGGGTGAGATG
CCTATTCCCAGGGATAGCCACAGTGCTGTTGCAATCGGTAATAGGCTCTATATATATGGT
GGAGATTGTGGTGACCGATATCAAGGTGATGTCGATGTGCTTGATATGGATACACTAATG
TGGTTAAAGCTGGATGTTCTTGGACCTTCACCTGGTGCTCGAGCGGGTCATGCCTCTGTG
AATTTTGGGTCAAAGGTATATGTGATTGGTGGAGTTGGAGACAAGAAGTACTACAATGAT
GTTTGGGTTCTTGATGTGACAAATTTTTCTTGGACTCAGCTTGATGTAATGGGCCAAAAA
CCACAGGGGCGATTTTCTCATACCGCTGCTGCCAGGAACACAGATATTGTAATCTACGGA
GGTTGTGGTGAGGATGAGCGGCCGCTCAATGAGTTGCTTATCTTGCAGTTTGAAGTAGAA
CATCCTAATGGGAATAGCGGCGTTTCTGGTGGCAGAAATACAAGTCATTATGATAAGAAA
AGGTTTCTGAGAGAGATACACAATAGCTCGGATGCTATCTGTAGGGGAAAGAAGGAAGAT
ATAGTAGCAACGGGATCTCAAGAGCTTGAGTCAAAAGCAGCTTTTCGCTTTAGTTCTGAC
ACATTGCATCCAAAGAGGAGAAGAATGAGTAACAATTCACACATATTTAATCTGGAGTCG
GAGCCGGAAGATCAGTCTCCTTCTCTATCTCAGCGTTCACCTCCGTCCCAACCTGATCCA
GAAATGAGCTCTGTTAAGCCAGGCTCCGGTTCTGGAACTGCATCACAACGGTTTCTCTTA
GCAAGACAGCAACACTTGACCCCTAACAATTGCCAGCCAAACCAGAAGAATGTCATAACA
AGGAATCCTCGTGATATGCAATTATTTCGTGAACAATTAATTCCGTCAAACTCAGGACAT
GTATCTGCCGTTCTTATGGATAAGCCGGAAGTGCAATGCCAATCCTTGGAGGCCGGACGA
TTCCACAACTTGATTGGGGCTGAGATCCGGGGAAAAGTCGATGGAGCATTTGATTCTGGT
TATCTAATGACAGCCATTGTTAACGGAAAGATTTTTCGAGGTGTTCTGTTTGCTCCGGCA
CCGGATCTATTACCACGAGGAGGACCCGTCCTTGGTCAGAATCCTTCACCCCCTCGAGGA
CAGAATATTGGTGTCAACTACGCAAACACACACGTAAACCATGTAAGTCTAGCTTGTCGA
AGGCAACCTCAACAGTTGGTACAAATGCAAGTTCAAGAACTCGGACGACAGAGCTTAGGG
AAGGTTCCAGTTAGAAGATCAACATCACTAATGAGATTATCTCAACTAGACGAAGATGCA
AAGCAAAGAAGTGAACTTGAAGGAGTGGTTCTCACACTAGGAGGTCCAGGATGTGGCAAA
ACCTAA

Peptide Sequence

PEP ID

XP_016459678.1
PEP Infomation

PREDICTED: rab9 effector protein with kelch motifs-like [Nicotiana tabacum]
Sequence

MGSLGGEVVQLKNKKTMWLYPKVMGVHPSERWGHSSCYSNGFVYVFGGCRGGLHFSDVLV
LNLEAMAWSILVTTGQGPGPRDSHSAVLVGHRMVVFGGTNGSRKVNDLHILDIRSQEWTQ
LECQGIPPSPRESHTATLVGGDKIVIFGGSGEGEGNYLNDLHVLDLKSMKWTSPEVRGEM
PIPRDSHSAVAIGNRLYIYGGDCGDRYQGDVDVLDMDTLMWLKLDVLGPSPGARAGHASV
NFGSKVYVIGGVGDKKYYNDVWVLDVTNFSWTQLDVMGQKPQGRFSHTAAARNTDIVIYG
GCGEDERPLNELLILQFEVEHPNGNSGVSGGRNTSHYDKKRFLREIHNSSDAICRGKKED
IVATGSQELESKAAFRFSSDTLHPKRRRMSNNSHIFNLESEPEDQSPSLSQRSPPSQPDP
EMSSVKPGSGSGTASQRFLLARQQHLTPNNCQPNQKNVITRNPRDMQLFREQLIPSNSGH
VSAVLMDKPEVQCQSLEAGRFHNLIGAEIRGKVDGAFDSGYLMTAIVNGKIFRGVLFAPA
PDLLPRGGPVLGQNPSPPRGQNIGVNYANTHVNHVSLACRRQPQQLVQMQVQELGRQSLG
KVPVRRSTSLMRLSQLDEDAKQRSELEGVVLTLGGPGCGKT

Transcript Sequence

Gene sequence data has not been registered.